rs6309576 SNP Detail

Summary

• ID
  rs6309576
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69001651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATGCACTT TTAAGAGTAT
  ACAGAGGCAA ACCTCTGATT CTTAAGACCC TGCTGCTCAA ACCTAGGAAA GACTGTCATA
  CGGAATGTAC TAGTTTTATA TTAGGGTTTC ACTGTGGCTC CTTGAGAAGA GAGCCACGGG
  AAGACGTTGC TGCTCAAGAA AAGGCCTCGA CCTGGCACTC TAGGTGTAGC GCACGCTTTT
  W
  AAAAAAAAAA AAAAAAAAAA GGAACGGTGA AATCCGCAGG GGTCGAGGGC CTTGATGGCC
  AGCTATAGCT CCACAGGCCA AGGGCCGCAC GCGGCTGTGA TGGCCGAGTG GTTAAGGCGT
  TGGACTCGAA ATCCAATGGG GTCTCCCCGC GCAGGTTCGA ATCCTGCTCA CAGCGCTAGT
  AGTTTTGGTA TTGCTGTCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8715526	WI_WGS_11_69691928	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6309576					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69001651 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3105	CpG island 3105	34 bp proximal
n-TScga3	nuclear encoded tRNA serine 14 (anticodon CGA)	94 bp upstream
n-TTagt5	nuclear encoded tRNA threonine 5 (anticodon AGT)	287 bp downstream
Per1	period circadian clock 1	865 bp downstream
Rr402659	regulatory region 402659	within coordinates
Rr449875	regulatory region 449875	within coordinates
Rr449876	regulatory region 449876	232 bp distal
Rr449877	regulatory region 449877	1157 bp proximal