rs6309584 SNP Detail

Summary

• ID
  rs6309584
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130660727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCCAGGT ACCTTAGTTT
  TCCATTCCAT TTGTAAAAGG AAATTCTCCA TGGCTCAGTG TCTATCTTTA TTTAAATAAG
  GGGTGCAGTG TGTGTGTTAG TTGATAATGG CGCACTCTGT GCAGATATGT AAAGTCTGAA
  CCGAGCTAGA TTATTTGCAA GGAGAATTGA GGCTTGGAAA TATGGAGGAA ACTCCAACTC
  M
  AGCTAGCATT TTATCTTTGG AAAACCCACA AATATTCTAA CTCCGATCAA ATTTACTCAG
  GGTCTACTAG CTAGTTAAAT CTCTGATTTT ACCTGTTGAT CGATGTAGAC CAAAAAAAAA
  AAAAAAGTTA CTTGGCCATG CTGGGCCTCA CCCACATTTT ATTTCATCTC AACATACCAA
  ACCTAGCCAG ACTTCCAACT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8715534	WI_WGS_1_131563790	WI	MOUSE	f	SNP							C		A
ss49673605	NES12996639	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6309584					SNP	C	C	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49673605	NES12996639	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130660727 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
AA986860	expressed sequence AA986860			Intron
				Noncoding-Transcript-Variant
Rr417949	regulatory region 417949			1004 bp distal
Rr417950	regulatory region 417950			370 bp distal
Rr417951	regulatory region 417951			within coordinates
Rr417952	regulatory region 417952			829 bp proximal
Tssr8565	transcription start site region 8565			999 bp downstream
Tssr8566	transcription start site region 8566			938 bp downstream
Tssr8567	transcription start site region 8567			889 bp downstream
Tssr8568	transcription start site region 8568			855 bp downstream
Tssr13523	transcription start site region 13523			368 bp upstream
Tssr13524	transcription start site region 13524			860 bp downstream