rs6309586 SNP Detail

Summary

• ID
  rs6309586
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:176538239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AGTGAGGAAG
  CCCATCATAT TGGGGNAGGG GATGCCAAAG TGTTAAGGAA ANCATGCTGA GAAGAAAATC
  AGAAGAGAAG GAAACATTAC AGGAAAGTAG GCAAAGTTAA TGCCCAACAC TAGGATAAAA
  GTTGTCANTA GTCTGAAATT CAAATGTAAG CAGGCATCCT GTGTTGTTCA CCCAGGCTAA
  CAACCTGCAG AGACCCCTCT CTGGGTACAC CTTCAAGCCC TGTCCTGTTC CNTCCCAGCA
  Y
  TGTCCTGGAG AGGGACTGAG AAGGCAGTGT TACGCAAACA GTCATCTAAA AGGGAGATGA
  TTTCTGTCAC CGTTTGAAAC AAGCTTAGGG TTATTGTTTC CACTNCAACC TGCAATTGGN
  GCTCCTGTTC ATTATAAAGA AGTGTGGGGC TGTGTTCCCC TTTGTATANT CTAAACATAC
  ATTTGAAAAT ATGTATGTGG GACCAATGTG TGTTGTGTGC ACGTGAATGT GCCAGTGTGC
  ATGCTCACAC                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8715536	WI_WGS_1_178029164	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6309586					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:176538239 () rs orientation: forward

Symbol	Name	Function Class
Rr396622	regulatory region 396622	1892 bp upstream
Rr423899	regulatory region 423899	1814 bp proximal
Rr423900	regulatory region 423900	1903 bp proximal