rs6309854 SNP Detail

Summary

• ID
  rs6309854
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81254920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAATGCATG GACATGGAAA TTTCATTAAA ATTCTGATTC
  TGTGAATAAT ATGGAAAAGC CAAACCGTAC ATATCTACCT GTCTCCAGCA GGTGACTTCG
  K
  GCATCTATAT TAGGAAACAT GGTTAGCGTT GTTTTGGCAC CTGACACCAA ATAGCTCTGG
  TCTGAATGTC CTAGCATAAA ACACTAGAAA CTGTCATCA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8715805	WI_WGS_17_80229907	WI	MOUSE	f	SNP			T	G
ss39496775	mCV27577784	ABI	CRAMUS_MOUSE	f	SNP	G	G	T		G
ss146077763	ENSMUSSNP3812843	ENSEMBL	ENSEMBL_Sanger	f	SNP		G			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6309854					SNP	G	G	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81254920 () rs orientation: forward

Symbol	Name	Function Class
D17Mit258	DNA segment, Chr 17, Massachusetts Institute of Technology 258	814 bp distal
Rr340234	regulatory region 340234	within coordinates
Tmem178	transmembrane protein 178	within coordinates