rs6309930 SNP Detail

Summary

• ID
  rs6309930
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81254967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGACCCAC GTTAGGCTGG
  ACGAGTAACT CTTTGGGTCT GTTTCACCTC TGGGAAATGC ATGGACATGG AAATTTCATT
  AAAATTCTGA TTCTGTGAAT AATATGGAAA AGCCAAACCG TACATATCTA CCTGTCTCCA
  GCAGGTGACT TCGTGCATCT ATATTAGGAA ACATGGTTAG CGTTGTTTTG GCACCTGACA
  Y
  CAAATAGCTC TGGTCTGAAT GTCCTAGCAT AAAACACTAG AAACTGTCAT CATGTGCACC
  TCAAACATCT GTTTAACTGG AGGCTCAAGG TCTACTTTCT ACTTTCCTCT CTGAATTACC
  TTTTGAGTCT TATAATCCCT TAGAAATTTT AATTATTGAC AAGTTGACTC AGATGGGAGA
  TTAGACAGGG GTCAGAATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8715881	WI_WGS_17_80229954	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6309930					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81254967 () rs orientation: forward

Symbol	Name	Function Class
D17Mit258	DNA segment, Chr 17, Massachusetts Institute of Technology 258	861 bp distal
Rr340234	regulatory region 340234	within coordinates
Tmem178	transmembrane protein 178	within coordinates