rs6309959 SNP Detail

Summary

• ID
  rs6309959
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81254988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGTAACTC TTTGGGTCTG
  TTTCACCTCT GGGAAATGCA TGGACATGGA AATTTCATTA AAATTCTGAT TCTGTGAATA
  ATATGGAAAA GCCAAACCGT ACATATCTAC CTGTCTCCAG CAGGTGACTT CGTGCATCTA
  TATTAGGAAA CATGGTTAGC GTTGTTTTGG CACCTGACAC CAAATAGCTC TGGTCTGAAT
  K
  TCCTAGCATA AAACACTAGA AACTGTCATC ATGTGCACCT CAAACATCTG TTTAACTGGA
  GGCTCAAGGT CTACTTTCTA CTTTCCTCTC TGAATTACCT TTTGAGTCTT ATAATCCCTT
  AGAAATTTTA ATTATTGACA AGTTGACTCA GATGGGAGAT TAGACAGGGG TCAGAATGTG
  GGTTATATAA ACTTTGTGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8715911	WI_WGS_17_80229975	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6309959					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81254988 () rs orientation: forward

Symbol	Name	Function Class
D17Mit258	DNA segment, Chr 17, Massachusetts Institute of Technology 258	882 bp distal
Rr340234	regulatory region 340234	within coordinates
Tmem178	transmembrane protein 178	within coordinates