rs6310083 SNP Detail

Summary

• ID
  rs6310083
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40906671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAACTATG AAATATTAAT
  CGAGTTTTTT GTGTGTTTGT TTTTGTTTTG TTTGTTTGTT TGTTTTGTTT GCTTTTCGGT
  TTTTGGAGAC AGGGTTTCTC TTTACAGCCT TGGCTGTCCT GGAACTCACT TTGTAGACCA
  GGCTGTCCTC GAACTCAGAA ATCCACCTGC CTCTGCCTCC CGGGTGCTGG GATTAAAGGC
  R
  TGCGCCACCA CCGCCTGGCT CCGAGTTTTT ATAAACTCAG TTTTCTAGAC TTTAAAACGT
  TTCAAAGTGA AACTGGAGAT TCTTTTCCCC CCTCATGGGG ATGAGCCTAG GGCTTTGTGC
  TTGCTGGGCA AGTGCTTTAT CATCAAGCTG TATGTGCAGA TTTTCTAGCC CCTCCCCCCA
  AGAATTTTAT TGCAGATTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8716036	WI_WGS_3_40934033	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6310083					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40906671 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13115	CpG island 13115	1031 bp distal
Larp1b	La ribonucleoprotein 1B	within coordinates
Rr575874	regulatory region 575874	1434 bp distal
Rr575875	regulatory region 575875	525 bp distal
Rr575876	regulatory region 575876	659 bp distal
Tssr28981	transcription start site region 28981	1818 bp downstream
Tssr28982	transcription start site region 28982	1579 bp downstream
Tssr28983	transcription start site region 28983	1398 bp downstream