rs6310093 SNP Detail

Summary

• ID
  rs6310093
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:176538344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAGCAGGC ATCCTGTGTT
  GTTCACCCAG GCTAACAACC TGCAGAGACC CCTCTCTGGG TACACCTTCA AGCCCTGTCC
  TGTTCCTTCC CAGCACTGTC CTGGAGAGGG ACTGAGAAGG CAGTGTTACG CAAACAGTCA
  TCTAAAAGGG AGATGATTTC TGTCACCGTT TGAAACAAGC TTAGGGTTAT TGTTTCCACT
  Y
  CAACCTGCAA TTGGTGCTCC TGTTCATTAT AAAGAAGTGT GGGGCTGTGT TCCCCTTTGT
  ATAGTCTAAA CATACATTTG AAAATATGTA TGTGGGACCA ATGTGTGTTG TGTGCACGTG
  AATGTGCCAG TGTGCATGCT CACACAGGGG TCAGGGGTAT TTTCTGTCAC TCTTGCCTTA
  TTCCTTTTAA GATAAAATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8716046	WI_WGS_1_178029269	WI	MOUSE	f	SNP							C		T
ss46702043	NES10691030	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6310093					SNP	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46702043	NES10691030	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:176538344 () rs orientation: forward

Symbol	Name	Function Class
Rr396622	regulatory region 396622	1787 bp upstream
Rr423899	regulatory region 423899	1709 bp proximal
Rr423900	regulatory region 423900	1798 bp proximal