rs6310135 SNP Detail

Summary

• ID
  rs6310135
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:176538359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTGTTCA CCCAGGCTAA
  CAACCTGCAG AGACCCCTCT CTGGGTACAC CTTCAAGCCC TGTCCTGTTC CTTCCCAGCA
  CTGTCCTGGA GAGGGACTGA GAAGGCAGTG TTACGCAAAC AGTCATCTAA AAGGGAGATG
  ATTTCTGTCA CCGTTTGAAA CAAGCTTAGG GTTATTGTTT CCACTCCAAC CTGCAATTGG
  K
  GCTCCTGTTC ATTATAAAGA AGTGTGGGGC TGTGTTCCCC TTTGTATAGT CTAAACATAC
  ATTTGAAAAT ATGTATGTGG GACCAATGTG TGTTGTGTGC ACGTGAATGT GCCAGTGTGC
  ATGCTCACAC AGGGGTCAGG GGTATTTTCT GTCACTCTTG CCTTATTCCT TTTAAGATAA
  AATCTCTCAC TGAGCTTGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8716088	WI_WGS_1_178029284	WI	MOUSE	f	SNP							T		G
ss46702046	NES10691031	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T		T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6310135					SNP	T	T	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46702046	NES10691031	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:176538359 () rs orientation: forward

Symbol	Name	Function Class
Rr396622	regulatory region 396622	1772 bp upstream
Rr423899	regulatory region 423899	1694 bp proximal
Rr423900	regulatory region 423900	1783 bp proximal