rs6310522 SNP Detail

Summary

• ID
  rs6310522
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130660860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGAACCG AGCTAGATTA
  TTTGCAAGGA GAATTGAGGC TTGGAAATAT GGAGGAAACT CCAACTCCAG CTAGCATTTT
  ATCTTTGGAA AACCCACAAA TATTCTAACT CCGATCAAAT TTACTCAGGG TCTACTAGCT
  AGTTAAATCT CTGATTTTAC CTGTTGATCG ATGTAGACCA AAAAAAAAAA AAAAGTTACT
  Y
  GGCCATGCTG GGCCTCACCC ACATTTTATT TCATCTCAAC ATACCAAACC TAGCCAGACT
  TCCAACTGGG GCTCAGGTCA GAGTGATGCG GCAGAGTCCA TAGGAGTAGA GGCTTGGGTG
  GGGCTTATGC TTCGTGTTTC TTCAGATGTC CCTGTGGACA CAAAGTGTAG CTGGAGCATC
  TGTCTAAAGA AGCTGCCACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8716477	WI_WGS_1_131563923	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6310522					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130660860 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
AA986860	expressed sequence AA986860			Intron
				Noncoding-Transcript-Variant
Rr417949	regulatory region 417949			1137 bp distal
Rr417950	regulatory region 417950			503 bp distal
Rr417951	regulatory region 417951			within coordinates
Rr417952	regulatory region 417952			696 bp proximal
Tssr8565	transcription start site region 8565			1132 bp downstream
Tssr8566	transcription start site region 8566			1071 bp downstream
Tssr8567	transcription start site region 8567			1022 bp downstream
Tssr8568	transcription start site region 8568			988 bp downstream
Tssr13523	transcription start site region 13523			501 bp upstream
Tssr13524	transcription start site region 13524			727 bp downstream