rs6310523 SNP Detail

Summary

• ID
  rs6310523
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:65937499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATCG ATGTTCCTTC CTTCCTAATG
  R
  CTCTCCAGCC TGTGTCAAGT TGACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8716478	WI_WGS_18_66143601	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6310523					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:65937499 () rs orientation: forward

Symbol	Name	Function Class
Rr405701	regulatory region 405701	1917 bp downstream
Rr405702	regulatory region 405702	1029 bp downstream
Rr539616	regulatory region 539616	1574 bp distal
Rr539618	regulatory region 539618	885 bp distal
Rr539619	regulatory region 539619	971 bp proximal
Sec11c	SEC11 homolog C, signal peptidase complex subunit	within coordinates
Tssr151701	transcription start site region 151701	829 bp downstream
Tssr151702	transcription start site region 151702	1698 bp upstream