rs6310587 SNP Detail

Summary

• ID
  rs6310587
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:176538408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TGTGTTGTTC
  ACCCAGGCTA ACAACCTGCA GAGACCCCTC TCTGGGTACA CCTTCAAGCC CTGTCCTGTT
  CCNTCCCAGC ANTGTCCTGG AGAGGGACTG AGAAGGCAGT GTTACGCAAA CAGTCATCTA
  AAAGGGAGAT GATTTCTGTC ACCGTTTGAA ACAAGCTTAG GGTTATTGTT TCCACTNCAA
  CCTGCAATTG GNGCTCCTGT TCATTATAAA GAAGTGTGGG GCTGTGTTCC CCTTTGTATA
  K
  TCTAAACATA CATTTGAAAA TATGTATGTG GGACCAATGT GTGTTGTGTG CACGTGAATG
  TGCCAGTGTG CATGCTCACA CAGGGGTCAG GGGTATTTTC TGTCACTCTT GCCTTATTCC
  TTTTAAGATA AAATCTCTCA CTGAGCTTGA GGCTCACCAC TTGTCTTCAC TCCCAATATC
  TAGAATTACA TCACACACAT AACCCTATGC CCACTGCTTT ATATGGATGC TGGGGGTGGG
  GGTTAAACTC                                                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8716542	WI_WGS_1_178029333	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6310587					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:176538408 () rs orientation: forward

Symbol	Name	Function Class
Rr396622	regulatory region 396622	1723 bp upstream
Rr423899	regulatory region 423899	1645 bp proximal
Rr423900	regulatory region 423900	1734 bp proximal