rs6310596 SNP Detail

Summary

• ID
  rs6310596
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40906753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGAGACAG GGTTTCTCTT
  TACAGCCTTG GCTGTCCTGG AACTCACTTT GTAGACCAGG CTGTCCTCGA ACTCAGAAAT
  CCACCTGCCT CTGCCTCCCG GGTGCTGGGA TTAAAGGCAT GCGCCACCAC CGCCTGGCTC
  CGAGTTTTTA TAAACTCAGT TTTCTAGACT TTAAAACGTT TCAAAGTGAA ACTGGAGATT
  Y
  TTTTCCCCCC TCATGGGGAT GAGCCTAGGG CTTTGTGCTT GCTGGGCAAG TGCTTTATCA
  TCAAGCTGTA TGTGCAGATT TTCTAGCCCC TCCCCCCAAG AATTTTATTG CAGATTACTT
  GGAAAAATAT TTGACAGTTT AACCTACTTG TGCCTTGGAT CTCCAGTCCT CCTTAGATTA
  AGGATACAGT GACTTACTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8716551	WI_WGS_3_40934115	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6310596					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40906753 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13115	CpG island 13115	1113 bp distal
Larp1b	La ribonucleoprotein 1B	within coordinates
Rr575874	regulatory region 575874	1516 bp distal
Rr575875	regulatory region 575875	607 bp distal
Rr575876	regulatory region 575876	741 bp distal
Tssr28981	transcription start site region 28981	1900 bp downstream
Tssr28982	transcription start site region 28982	1661 bp downstream
Tssr28983	transcription start site region 28983	1480 bp downstream