rs6310610 SNP Detail

Summary

• ID
  rs6310610
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40906760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TTTTGTtttg
  tttgtttgtt tgttttgttt gcttTTCGGt ttttggagac gagggtttct ctttanagcc
  ttggctgtcc tggaactcac tttgtagacc aggctgtcct cgaactcaga aatccacctg
  cctctgcctc ccgggtgctg ggattaaagg cntgcgccac caccgcctgg cTCCGAGTTT
  TTATAAACTC ACTTTTCTAG ACTTTAAAAC GTTTCAAAGT GAAACTGGAG ATTNTTTTCC
  S
  CCCTCATGGG GATGAGCCTA GGGCTTTGTG CTTGCTGGGC AAGTGCTTTA TCATCAAGCT
  GTATGTGCAG ATTTTCTAGC CCCTCCCCCC AAGAATTTTA TTGCAGATTA CTTGGAAAAA
  TATTTGACAG TTTAACCTAC TTGTGCCTTG GATCTCCAGT CCTCCTTAGA TTAAGGATAC
  AGTGACTTAC TGGGAGTGTG GCCCATACCT ATAATTCCAA CAAGGGGATT ATGAGCTTGA
  AGCCAGCCTG                                                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8716565	WI_WGS_3_40934122	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6310610					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40906760 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13115	CpG island 13115	1120 bp distal
Larp1b	La ribonucleoprotein 1B	within coordinates
Rr575874	regulatory region 575874	1523 bp distal
Rr575875	regulatory region 575875	614 bp distal
Rr575876	regulatory region 575876	748 bp distal
Tssr28981	transcription start site region 28981	1907 bp downstream
Tssr28982	transcription start site region 28982	1668 bp downstream
Tssr28983	transcription start site region 28983	1487 bp downstream