rs6311200 SNP Detail

Summary

• ID
  rs6311200
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78747896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GTGGAATGGT
  GGTGCCCGCC TTTAATTAAC CCTGTAGAAA CCTTCTCAGG CTCAGAGATT TGTTCCTGTC
  AGATTCTAGA TCTCTTCAAA TGGATGCTAA CCAACCACAT TCTGTcctcc aagtctccag
  aaccatgaac tgaataaacc tctgttcttt ataaatcacc ccgtctccgg tgtcttacta
  cagttactgg agcaggctca agacaAACAC ATCCAGAGGC TTGCCTCACA GGCCCAAGGA
  Y
  TGCCTTTCCT TGATCTCATT TACGGGCTCT GCGGTCTTTC CGACCCCAGG ACCTGCAGGG
  CTCTGGGTCA TCCTACCTTA CTGGAATCAT GGGGCTGGCC TTGAGGGAGA AAGAAAGCAG
  GGAAGGGGAA CGGGGGTGGG GAGGAGTTGA AGAGTTGAAG GAAGGGTATA GGACCCCAGC
  CACGCACTGT TCCCCTTCTC CAGCTCCGCC CACGCTCCTC CAACCCCGCC CACGCTCCTC
  CAGCCCCTCC                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8717158	WI_WGS_15_79587401	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6311200					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78747896 () rs orientation: forward

Symbol	Name	Function Class
Gm26634	predicted gene, 26634	within coordinates
Gm63169	predicted gene, 63169	452 bp upstream
Rr505427	regulatory region 505427	within coordinates