rs6311526 SNP Detail

Summary

• ID
  rs6311526
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:57568034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGGCGCC GCCTGGTCTT
  GTCTAGACCC AGAGCGTAGC GCGCGCGGCC ACCAAGGCGC ACCAGCTGTG CGCCCCCCAA
  CCCCCAGCTC ACTAATCACA AGCGCCCCAG GTGCCCCACT CGCGAGCGAC GGCGGCAGCC
  ACGGGTCCCC CACACCCCAG GGGCGGAGCG AGGCGCGGAG ACGTCAGGGC GGGGACCTAG
  Y
  GCTGCGGAGC GCGCTCTCCC GGAGGCTCCC GGCGGCCCAC GTTCCCGGCT GGCGCGGCCG
  GTGGTGGCGG TGGCGGTTGA GACTGGGATC TTGCAGTTCG CGGCGGCGCT GGGGCGCAGC
  CAGGCGGCCG CGCCGGTGGA GACGGAGGCT GAGCTCTGAG CCAGCCGTGC GCGCAGCTTT
  GCCCGCCCCC CCCCCCAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8717485	WI_WGS_4_56467545	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6311526					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:57568034 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14331	CpG island 14331	within coordinates
Pakap	paralemmin A kinase anchor protein	within coordinates
Rr89687	regulatory region 89687	1834 bp distal
Rr101053	regulatory region 101053	within coordinates
Tssr37355	transcription start site region 37355	316 bp downstream
Tssr37356	transcription start site region 37356	198 bp downstream
Tssr37357	transcription start site region 37357	165 bp downstream
Tssr37358	transcription start site region 37358	within coordinates
Tssr37359	transcription start site region 37359	87 bp upstream
Tssr37360	transcription start site region 37360	110 bp upstream