rs6311638 SNP Detail

Summary

• ID
  rs6311638
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:118574103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATCC AAGGGAAGCA TAATGCTATG
  Y
  GCATTATCTT GGAAGGCTTA TGACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8717597	WI_WGS_6_119390546	WI	MOUSE	f	SNP			C	T
ss45981998	mCV27570014	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss133584382	ENSMUSSNP2737256	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss321925401	CHEV_6_118547160	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6311638					SNP	T	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118574103 () rs orientation: forward

Symbol	Name	Function Class
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit	within coordinates
Gm38887	predicted gene, 38887	within coordinates