rs6311832 SNP Detail

Summary

• ID
  rs6311832
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122553771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTAGCTC TCTGTCCAGT
  AAGTGGACAT TATCCCGGAT TGTTCTTTCA CTGGTCATGC TGGGGACTTT GTTTTTCTGT
  CTGAATTCTC TCCTGGATTC CAGTATTTCA CTCTTCCTTA GTTTAATAGA TTAGTGTAGT
  AAACCCTCCA GATGCTCGCT GAGAAACAGA GCTTGGGAAG TCACTTCATC CCTTATCTGT
  Y
  GACGTGTCTT TATTTCCAAC TGTGTCATTA TTCTCTTCAC CGTGACAGAA TGTCTGATAG
  GAATGATACT TATTTATGTT CTATTTGCAT GTATGCTCGT GTGACAGAAG AGAGCATCCG
  ACCATCCCAT TATAGATGTA GATAGTTTGA GCGACTATGT GGTTTCTGGA AAATGAACTC
  AGGATCTTTG GAAAGGCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8717793	WI_WGS_6_123625875	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6311832					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122553771 () rs orientation: forward

Symbol	Name	Function Class
Apobec1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	980 bp downstream
Tssr1999	transcription start site region 1999	1376 bp downstream
Tssr58682	transcription start site region 58682	983 bp upstream
Tssr58683	transcription start site region 58683	1059 bp upstream
Tssr58684	transcription start site region 58684	1595 bp upstream
Tssr62861	transcription start site region 62861	1094 bp downstream
Tssr62862	transcription start site region 62862	1150 bp downstream
Tssr62863	transcription start site region 62863	1179 bp downstream
Tssr62864	transcription start site region 62864	1198 bp downstream
Tssr62865	transcription start site region 62865	1239 bp downstream
Tssr62866	transcription start site region 62866	1365 bp downstream
Tssr62867	transcription start site region 62867	1451 bp downstream
Tssr62868	transcription start site region 62868	1639 bp downstream
Tssr62869	transcription start site region 62869	1851 bp downstream