rs6311901 SNP Detail

Summary

• ID
  rs6311901
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:24022539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTCATTA TTACTTGCCA
  TCTACGCCTC TTCAGTGTGC TTACTTCCTC TTTTTTTTTC CTTCGCTAGA GCAGTGGTTC
  TCAGCCTTCC TAATGCTGTG ACCCTTTAAT ACAGTTTCTC ATGTTGTGGT GACCCCTAAC
  TATGAAATTA TCTTGTTGCT ACTTTATAAC TGTAATTTTG ATACTGTGAT GAGTCCTAAT
  R
  TAAATATCTG CTATGCAGGA TATCTGCTAC GTAACCCCTA AGGTGTCTCA ATCCACAAAG
  GAGTAGTTGC TACATTAATG TTGTTAACTC AGAAGCTAGA ACAAATCCCA GCACACTTAC
  TGAAGCAGGT AGATCGCTGT ATGAGAAAGC AAATTGGCTT GCCAAGAATC TTTGGAATAG
  GGGCTAATAA TTCACTTCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8717862	WI_WGS_1_24371793	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6311901					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:24022539 () rs orientation: forward

Symbol	Name	Function Class
Gm53062	predicted gene 53062	within coordinates
Rr36322	regulatory region 36322	within coordinates
Rr395981	regulatory region 395981	27 bp downstream