rs6311992 SNP Detail

Summary

• ID
  rs6311992
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:143132134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAAGTTAT ATAAACTACA
  TTTAGATTGT CTAAGATAAA GGAGAAAAAA ACCAACAAAT GTATAGGAAA ACTAGTGTAA
  ACAGACTTAA TGAAAATGCA CTTGATCCAG GGGTGATGCC ACATGCTTTA AATCTAACTC
  TCAGGAGTCT GAAGAAGCAA ATCTCTTTGA GTTTGAGGTC AGCCTGGTCT ATGTAATGAG
  Y
  TGTAGGCCAG CTAAGGCTAT ATAATGAGAC CTTGTTTCCA AGAAAAACAG AAAACGGTAA
  TGTGCTTAAA AGTAAAGAAG GCTATGTTAG TGTTTTGAAT GAGAGTGAAG TGTGTGTTAT
  AATGGGGTCA TACATGATAT CTTTCACTTC AAGGCATTCA ATTCCGCTGG CCCATGTAAG
  ACCAGTCAAC CAAGTGGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8717953	WI_WGS_X_123586698	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6311992					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:143132134 () rs orientation: forward

Symbol	Name	Function Class
Alg13	asparagine-linked glycosylation 13	within coordinates