rs6312352 SNP Detail

Summary

• ID
  rs6312352
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:24022569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGTGTGC TTACTTCCTC
  TTTTTTTTTC CTTCGCTAGA GCAGTGGTTC TCAGCCTTCC TAATGCTGTG ACCCTTTAAT
  ACAGTTTCTC ATGTTGTGGT GACCCCTAAC TATGAAATTA TCTTGTTGCT ACTTTATAAC
  TGTAATTTTG ATACTGTGAT GAGTCCTAAT ATAAATATCT GCTATGCAGG ATATCTGCTA
  Y
  GTAACCCCTA AGGTGTCTCA ATCCACAAAG GAGTAGTTGC TACATTAATG TTGTTAACTC
  AGAAGCTAGA ACAAATCCCA GCACACTTAC TGAAGCAGGT AGATCGCTGT ATGAGAAAGC
  AAATTGGCTT GCCAAGAATC TTTGGAATAG GGGCTAATAA TTCACTTCTA AGGCTAAAAA
  GATATGCACT TCTTGGGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8718316	WI_WGS_1_24371823	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6312352					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:24022569 () rs orientation: forward

Symbol	Name	Function Class
Gm53062	predicted gene 53062	within coordinates
Rr36322	regulatory region 36322	within coordinates
Rr395981	regulatory region 395981	57 bp downstream