rs6312474 SNP Detail

Summary

• ID
  rs6312474
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:24022642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTAATACA GTTTCTCATG
  TTGTGGTGAC CCCTAACTAT GAAATTATCT TGTTGCTACT TTATAACTGT AATTTTGATA
  CTGTGATGAG TCCTAATATA AATATCTGCT ATGCAGGATA TCTGCTACGT AACCCCTAAG
  GTGTCTCAAT CCACAAAGGA GTAGTTGCTA CATTAATGTT GTTAACTCAG AAGCTAGAAC
  M
  AATCCCAGCA CACTTACTGA AGCAGGTAGA TCGCTGTATG AGAAAGCAAA TTGGCTTGCC
  AAGAATCTTT GGAATAGGGG CTAATAATTC ACTTCTAAGG CTAAAAAGAT ATGCACTTCT
  TGGGGCTGGA GCAATGGCTG CTCAGCAGTT AAGCGTACTG GCTGCTTTTC CAGAGGACAG
  AGGTTTGATT CTCAGCACAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8718438	WI_WGS_1_24371896	WI	MOUSE	f	SNP							A		C
ss50930093	NES13480106	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		C		A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6312474					SNP	A	A	A	A	A	A	A	C	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50930093	NES13480106	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:24022642 () rs orientation: forward

Symbol	Name	Function Class
Gm53062	predicted gene 53062	within coordinates
Rr36322	regulatory region 36322	within coordinates
Rr395981	regulatory region 395981	130 bp downstream