rs6312550 SNP Detail

Summary

• ID
  rs6312550
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:57568201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ACTCGCGAGC
  GACGGCGGCA GCCACGGGTC CCCCACACCC CAGGGGCGGA GCGAGGCGCG GAGACGTCAG
  GGCGGGGACC TAGNGCTGCG GAGCGCGCTC TCCCGGAGGC TCCCGGCGGC CCACGTTCCC
  GGCTGGCGCG GCCGGTGGTG GCGGTGGCGG TTGAGACTGG GATCTTGCAG TTCGCGGCGG
  CGCTGGGGCG CAGCCAGGCG GCCGCGCCGG TGGAGACGGA GGCTGAGCTC TGAGCCAGCC
  S
  TGCGCGCAGC TTTGCCCGCC CCCCCCCCCA GGAGCAGACC CCACGNGCCC TTAGGCTGTC
  CCCGGGGTCG AGTTGAGCTC CCCACGGGTG CCCTTTTATC TCCTTGGGTG ACTACAGCGT
  GTGTTTTGTT TTTCTTCCTT TTTCCCCTGC CCGTGTGCCC TTCTCCAGGA TGGCAGAGGC
  GGAATTGCAC AAGGAGAGGC TGCAAGCCAT AGCAGTAAGT CCACTTTTCA TTTCATTTTC
  TTGCTCTATT                                                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8718514	WI_WGS_4_56467712	WI	MOUSE	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6312550					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:57568201 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14331	CpG island 14331	within coordinates
Pakap	paralemmin A kinase anchor protein	within coordinates
Rr101053	regulatory region 101053	within coordinates
Tssr37355	transcription start site region 37355	483 bp downstream
Tssr37356	transcription start site region 37356	365 bp downstream
Tssr37357	transcription start site region 37357	332 bp downstream
Tssr37358	transcription start site region 37358	108 bp downstream
Tssr37359	transcription start site region 37359	65 bp downstream
Tssr37360	transcription start site region 37360	41 bp downstream