rs6312578 SNP Detail

Summary

• ID
  rs6312578
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:43815531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGGTCTC CTAACAAGTG
  GAATAGGGGA TGTCTCAGTC TCTGGTCCCT GCCATTGCAT CCCCTTCCCC CTACCTGGAC
  TGCCTGGTTG GGTCTCAGTG AGAAAGGATA TGTATGGCTA GCCTTGCTGG AAGTAGACGC
  CCCAAGGTCG GGTGGTACCC AAGGATGGCT TCCTCTCTCT GAAGAAAAGT AGAGGGAGTA
  W
  TGCAGGGAGG GATTTGTAAA GGCGGGGCTA GGAAGAGGAT GGCAGCTGTG ATTAGGATGT
  AAAGTGAATA AAAAAATTAA AAACAAAACA AAAAATTAAG ATACAAATCA TGGGAAGAAG
  TAAAGGAATT AACACTTACT GAGTTCATAA CATGTGTTTG GGATTTTATT TTTCCCCTCA
  TTTTATCCTA ATGCACCCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8718542	WI_WGS_6_44057186	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6312578					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:43815531 () rs orientation: forward

Symbol	Name	Function Class
Gm35163	predicted gene, 35163	658 bp upstream
Rr144146	regulatory region 144146	413 bp proximal