rs6312619 SNP Detail

Summary

• ID
  rs6312619
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:57568247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CGGAGCGAGG
  CGCGGAGACG TCAGGGCGGG GACCTAGNGC TGCGGAGCGC GCTCTCCCGG AGGCTCCCGG
  CGGCCCACGT TCCCGGCTGG CGCGGCCGGT GGTGGCGGTG GCGGTTGAGA CTGGGATCTT
  GCAGTTCGCG GCGGCGCTGG GGCGCAGCCA GGCGGCCGCG CCGGTGGAGA CGGAGGCTGA
  GCTCTGAGCC AGCCNTGCGC GCAGCTTTGC CCGCCCCCCC CCCCAGGAGC AGACCCCACG
  S
  GCCCTTAGGC TGTCCCCGGG GTCGAGTTGA GCTCCCCACG GGTGCCCTTT TATCTCCTTG
  GGTGACTACA GCGTGTGTTT TGTTTTTCTT CCTTTTTCCC CTGCCCGTGT GCCCTTCTCC
  AGGATGGCAG AGGCGGAATT GCACAAGGAG AGGCTGCAAG CCATAGCAGT AAGTCCACTT
  TTCATTTCAT TTTCTTGCTC TATTGTCTGG GGTGGACGGG GACCTGTAGG CTCAGGGCCA
  GGGACATGCC                                                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8718584	WI_WGS_4_56467758	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6312619					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:57568247 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14331	CpG island 14331	within coordinates
Pakap	paralemmin A kinase anchor protein	within coordinates
Rr101053	regulatory region 101053	within coordinates
Tssr37355	transcription start site region 37355	529 bp downstream
Tssr37356	transcription start site region 37356	411 bp downstream
Tssr37357	transcription start site region 37357	378 bp downstream
Tssr37358	transcription start site region 37358	154 bp downstream
Tssr37359	transcription start site region 37359	111 bp downstream
Tssr37360	transcription start site region 37360	87 bp downstream