rs6313084 SNP Detail

Summary

• ID
  rs6313084
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:100244669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GAGGAACGTA
  AAGCCCACCT TCAGGGTAAG GCTGCTAAGT AAGGAGGCGA GTGCGCGCGC GGACGCCTCG
  CTGACAAGGG ACGCGCGGGG CGGTGGGGCG TGGGGACCGC GCACGCGCAG TGGCTCACCG
  GCCACGCCGC GGCTGTTGTG GGTCGGTGGG CGGGGCGGCT GGCTGGCCGA GCGAGGCGTC
  GCCACATCGA GGGCCCTTGT GGGGCTCAGC CTTCTTCAGC GCCCGGCGGC AACGGCTGAG
  M
  GTGCAAAGCC GCCGTTTGCT TCTCCAGGTC GCTGTCTTCC AGTCTCCGGC CGGTGGACAG
  CATGGCCCGT GAGTCTGCGG GCGGTTGGAA AGACGCGGAG GCTCGGGGAG GGACGGCGCC
  GAGCGGCCGG GGGAGGAGCG GGAGCTGGCT GGGAGGAGGA AGNGACGCAA ACGCCACCTC
  GTGCTTGTGG CGGGCGGGAC GCGGGCTCCT GGTGGGCCCG GTGCCCGCCT CCTNNNNNNN
  NNNNNNNNNN                                                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8719052	WI_WGS_13_97472421	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6313084					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:100244669 () rs orientation: forward

Symbol	Name	Function Class
BC001981	cDNA sequence BC001981	within coordinates
Cpgi6030	CpG island 6030	within coordinates
D13Die11	DNA segment, Chr 13, Dietrich 11	1772 bp distal
D13Die22	DNA segment, Chr 13, Dietrich 22	1618 bp distal
Rr280857	regulatory region 280857	within coordinates
Serf1	small EDRK-rich factor 1	within coordinates
Tssr120840	transcription start site region 120840	149 bp downstream
Tssr120841	transcription start site region 120841	18 bp downstream
Tssr120842	transcription start site region 120842	within coordinates
Tssr123774	transcription start site region 123774	17 bp downstream
Tssr123775	transcription start site region 123775	918 bp downstream