rs6313630 SNP Detail

Summary

• ID
  rs6313630
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:146372533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGATTTAGT AGGATCCTAC
  ATACTGACAT GTCACTACAT GGCCAGGAAG AGTCCCGAGT TTTGAGAGCA TCATTCTTTA
  CACAATATCC AATATGTTCC TGGGCACATT GTTCTGGTCA TCATGGTTAC TGTCTAGGCA
  GCATTTTGCA ATGCATTTAG ATTTTGTAAA TTGTGCTGGG GACAGTTAAT TGGTCAGGGA
  R
  GTCTCCATTC AGATGAAGAG AGCTCTCAGA AGCCACTGAT TATCTGGGTT CTAACACATT
  GAAATTCAGG GAGGGACTTT ACATGAAAAA TGTAATTGCC TCCGTCTTCA CACTTGCCCA
  CCCCTGCCCT CAGTTTTTTA ATAAGTATGT TAATATGGTC CCTGTTTTGT GCTTTTATGA
  ACATTTCTAT GGTCTTTAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8719599	WI_WGS_1_147369175	WI	MOUSE	f	SNP							G		A
ss49693536	NES12968930	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G		G		G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6313630					SNP	G	G	G	G	A	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49693536	NES12968930	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:146372533 () rs orientation: forward

Symbol	Name	Function Class
Brinp3	bone morphogenetic protein/retinoic acid inducible neural specific 3	Intron
Cpgi840	CpG island 840	570 bp proximal
Cpgi841	CpG island 841	1071 bp proximal
Gm29514	predicted gene 29514	1633 bp upstream
Rr372193	regulatory region 372193	within coordinates
Rr420041	regulatory region 420041	1855 bp distal
Rr420042	regulatory region 420042	1097 bp distal
Rr420043	regulatory region 420043	500 bp proximal
Rr420044	regulatory region 420044	903 bp proximal
Tssr9214	transcription start site region 9214	1189 bp downstream
Tssr9215	transcription start site region 9215	1159 bp downstream
Tssr9216	transcription start site region 9216	1116 bp downstream
Tssr9217	transcription start site region 9217	1102 bp downstream
Tssr9218	transcription start site region 9218	1088 bp downstream
Tssr9219	transcription start site region 9219	876 bp upstream