rs6313687 SNP Detail

Summary

• ID
  rs6313687
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:100244832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCAGCCTT CTTCAGCGCC
  CGGCGGCAAC GGCTGAGCGT GCAAAGCCGC CGTTTGCTTC TCCAGGTCGC TGTCTTCCAG
  TCTCCGGCCG GTGGACAGCA TGGCCCGTGA GTCTGCGGGC GGTTGGAAAG ACGCGGAGGC
  TCGGGGAGGG ACGGCGCCGA GCGGCCGGGG GAGGAGCGGG AGCTGGCTGG GAGGAGGAAG
  R
  GACGCAAACG CCACCTCGTG CTTGTGGCGG GCGGGACGCG GGCTCCAGGT GGGACAGGTG
  CCCGCCTCCT AGGTGCGGGT GTGCGTGAGG ACCGCGCCCA CCGGGAGCGT GGGCGGCTGC
  CCAGCGGGAC CAGTCCGCTG AGACGTAGCG GGCGCCTGAG GTCTGGAAGC CCAGGGTGCC
  CTCCAGCTCT TTTGTCCTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8719656	WI_WGS_13_97472584	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6313687					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:100244832 () rs orientation: forward

Symbol	Name	Function Class
BC001981	cDNA sequence BC001981	within coordinates
Cpgi6030	CpG island 6030	within coordinates
D13Die11	DNA segment, Chr 13, Dietrich 11	1935 bp distal
D13Die22	DNA segment, Chr 13, Dietrich 22	1781 bp distal
Rr280857	regulatory region 280857	within coordinates
Serf1	small EDRK-rich factor 1	within coordinates
Tssr120840	transcription start site region 120840	312 bp downstream
Tssr120841	transcription start site region 120841	181 bp downstream
Tssr120842	transcription start site region 120842	157 bp downstream
Tssr123774	transcription start site region 123774	141 bp upstream
Tssr123775	transcription start site region 123775	755 bp downstream