rs6314787 SNP Detail

Summary

• ID
  rs6314787
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:17160967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGTAACT ACAGTGGGGT
  TCATGCCGCT GTCTACCCAA GTCCGATTCA CTGTCGACCG TCCCTTCCTG TTCCTAGTGT
  ATGAGCACCG AACCAGCTGT CTGCTCTTCA TGGGAAAAGT GACCAACCCT GCCAAGTCTT
  AATGGCAGTG GTCTGGGCAC CTGATGTAGT TTGGGGACAC TCTGTATTCC TGTTTTCATT
  Y
  TAACAAAGAG GACAGAGCTA TTTTGCTATG ATAATCTCTG TGGTTTATGA TAATAATCTG
  AACAGCAAAC AGTGCCATTA AGTGCACAGA TGTTAATGCA ACTAATGGTT GTGCCAGCTA
  TTCCCTAGAG GTCCTAGACA CACAGACTGC CTTAGCCCCC ACACCTCTGT CCCTAGGAGA
  ATGAATGGGC AGAGTGGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8720758	WI_WGS_16_16814981	WI	MOUSE	f	SNP							C		T
ss48151485	NES12127892	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6314787					SNP	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48151485	NES12127892	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:17160967 () rs orientation: forward

Symbol	Name	Function Class
Gm24927	predicted gene, 24927	1091 bp upstream
Pi4ka	phosphatidylinositol 4-kinase alpha	within coordinates
Serpind1	serine (or cysteine) peptidase inhibitor, clade D, member 1	within coordinates