rs6314798 SNP Detail

Summary

• ID
  rs6314798
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53191155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACCG TCCGCTAGGA GGCTTGGGGC
  Y
  TGGAGAAAGA CGGGGGCCTC TACCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8720769	WI_WGS_11_53756374	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6314798					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53191155 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2859	CpG island 2859	within coordinates
Hspa4	heat shock protein 4	within coordinates
Rr369205	regulatory region 369205	85 bp upstream
Rr446993	regulatory region 446993	within coordinates
Rr446994	regulatory region 446994	119 bp proximal
Tssr101379	transcription start site region 101379	456 bp downstream
Tssr101380	transcription start site region 101380	433 bp downstream
Tssr101381	transcription start site region 101381	478 bp upstream
Tssr107908	transcription start site region 107908	149 bp upstream
Tssr107909	transcription start site region 107909	130 bp upstream
Tssr107910	transcription start site region 107910	107 bp upstream
Tssr107911	transcription start site region 107911	4 bp downstream
Tssr107912	transcription start site region 107912	45 bp downstream
Tssr107913	transcription start site region 107913	202 bp downstream
Tssr107914	transcription start site region 107914	358 bp downstream