rs6314877 SNP Detail

Summary

• ID
  rs6314877
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102903316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGCCACTA TGAGCTGCAC
  GATCGAGAAG ATCTTGACGG ACGCCAAGAC GCTGCTGGAG CGGCTGCGCG AGCACGATGC
  GGCGGCCGAG TCGCTGGTGG ACCAGTCGGC TGCGCTGCAC CGGCGGGTGG CGGCGATGCG
  GGAGGCGGGC GCCGTGTTAC CCGAGCAGGT CGGCCGGGGG CCGAGCCGCG CCCAGGGGTG
  R
  ACGCTGCGGG CGGGTGGGTG GGGTCGCGCG GCCTGATTTA TCTTGGTCTG GAGGGCAGGG
  CGGATGTGTG AGCTTCCTGT GTCGTGGGTG GGACTGCTGC CTCCTCCGCA GCACCTGCCC
  ATGTTTACAG TGCCTTAGTC TGTCTTTCTG TCCAGTATCA AGAGGATGCA TCCGACGTGA
  AGGACATGTC TAAATATAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8720848	WI_WGS_3_103105096	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6314877					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102903316 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13629	CpG island 13629	within coordinates
Rr397897	regulatory region 397897	183 bp downstream
Rr582293	regulatory region 582293	195 bp distal
Sike1	suppressor of IKBKE 1	within coordinates
Tssr30945	transcription start site region 30945	212 bp downstream
Tssr30946	transcription start site region 30946	190 bp downstream
Tssr30947	transcription start site region 30947	123 bp upstream