rs6315835 SNP Detail

Summary

• ID
  rs6315835
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53191359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GCTGGGCGGG
  CGAAGCCGGA CGACCGTCCG CTAGGAGGCT TGGNGCNTGG AGAAAGACGG GGGCCTCTAC
  CGCTCGGGCC GCGGCTCCGG CTCCACGGCC GCAGAGGAGG CGCCGGTCGC GGAGGCGGAG
  AAGATCTCGA AGGCTCTCGT TGCAACAGGA GCAAGGTTGC AGCGCGAGAA CTGCGCTGAA
  ACGAAACGTT CTCGCGAGAC CCCGGCTCAG ACGCTTTTCC TCCCAAGGCT CCTCCCGTCT
  K
  NCGAAGTCTG GCGTCACGTC CTGGCACAGG AACCGNGAAA GGAAGTGGGG GGACGGAAGN
  GGTCCGACGC GAAGTGGGCC ACTGAGCCTG CGCGGAGAAG CNCCCCACAA TCCTCCCTGA
  GCTGCAGGGC GCCTCCCATC CANAAGTCAG GCGAGCGGGA GTGAGACAGT TCTTCGGGGA
  GCTGCATTGA ACCCACTTCC GCCGTGCTCG TCACCGCGGA GGGACTTCCG GCAGTGACTT
  TGCAGGCTCT                                                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8721809	WI_WGS_11_53756578	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6315835					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53191359 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2859	CpG island 2859	within coordinates
Hspa4	heat shock protein 4	75 bp upstream
Rr369205	regulatory region 369205	within coordinates
Tssr101379	transcription start site region 101379	660 bp downstream
Tssr101380	transcription start site region 101380	637 bp downstream
Tssr101381	transcription start site region 101381	274 bp upstream
Tssr107908	transcription start site region 107908	353 bp upstream
Tssr107909	transcription start site region 107909	334 bp upstream
Tssr107910	transcription start site region 107910	311 bp upstream
Tssr107911	transcription start site region 107911	191 bp upstream
Tssr107912	transcription start site region 107912	17 bp upstream
Tssr107913	transcription start site region 107913	within coordinates
Tssr107914	transcription start site region 107914	154 bp downstream