rs6316343 SNP Detail

Summary

• ID
  rs6316343
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53191461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AGAGGAGGCG
  CCGGTCGCGG AGGCGGAGAA GATCTCGAAG GCTCTCGTTG CAACAGGAGC AAGGTTGCAG
  CGCGAGAACT GCGCTGAAAC GAAACGTTCT CGCGAGACCC CGGCTCAGAC GCTTTTCCTC
  CCAAGGCTCC TCCCGTCTNN CGAAGTCTGG CGTCACGTCC TGGCACAGGA ACCGNGAAAG
  GAAGTGGGGG GACGGAAGNG GTCCGACGCG AAGTGGGCCA CTGAGCCTGC GCGGAGAAGC
  Y
  CCCCACAATC CTCCCTGAGC TGCAGGGCGC CTCCCATCCA NAAGTCAGGC GAGCGGGAGT
  GAGACAGTTC TTCGGGGAGC TGCATTGAAC CCACTTCCGC CGTGCTCGTC ACCGCGGAGG
  GACTTCCGGC AGTGACTTTG CAGGCTCTCT GCAGGGTTTT TTTTTTTTTT TTTAAGGCCC
  CACAGTGAAC TCGAGTTAAT CCTGCTAAGG GCGCTAAGGG TTTCAGCTCG GCTCTACGTA
  AAACTCAGTA                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8722319	WI_WGS_11_53756680	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6316343					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53191461 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2859	CpG island 2859	within coordinates
Hspa4	heat shock protein 4	177 bp upstream
Rr369205	regulatory region 369205	within coordinates
Rr446993	regulatory region 446993	188 bp distal
Rr446994	regulatory region 446994	within coordinates
Tssr101379	transcription start site region 101379	762 bp downstream
Tssr101380	transcription start site region 101380	739 bp downstream
Tssr101381	transcription start site region 101381	172 bp upstream
Tssr107908	transcription start site region 107908	455 bp upstream
Tssr107909	transcription start site region 107909	436 bp upstream
Tssr107910	transcription start site region 107910	413 bp upstream
Tssr107911	transcription start site region 107911	293 bp upstream
Tssr107912	transcription start site region 107912	119 bp upstream
Tssr107913	transcription start site region 107913	94 bp upstream
Tssr107914	transcription start site region 107914	52 bp downstream