rs6316612 SNP Detail

Summary

• ID
  rs6316612
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148519476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAGTACT CAGCAAGAAA
  AGAGGTACCT TTTTCTGTGG CAGCCACATT TGTTTTTAGA ACAATAAAGG CAACGTTTGC
  TTCAACCACA AATCTTCATT TGTAGTCTAT TTCAAGTTCC CTTTTAGAAT GTCTGCTAAA
  TTGAGAGGTC TGGGTTCTGC TCTAACCTCT ATTTTGCTTT AACAAAGACA AGATTTTTTG
  K
  TTTTTTAGTG CTACCTTGTT GGAAAATTGT GAAAAGTCTT TCCTTCTAAT TTTTTTCCTG
  GGTGATTACC AAAAACACTT GTGTGAAATG GCTAAAGATG GAGTGTATAT GGGAGAGGGG
  AGCGGTTAAG TGATAATGTG CCCAAATTTA AAGCAGGTAA AGACTTGTGG CCTGTTAAAA
  CTCAACTCTC GAGCTGACCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8722589	WI_WGS_2_149713422	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6316612					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148519476 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12400	CpG island 12400	203 bp proximal
Gm75182	predicted gene, 75182	within coordinates
Nxt1	NTF2-related export protein 1	1530 bp downstream
Rr566948	regulatory region 566948	58 bp proximal
Rr566949	regulatory region 566949	441 bp proximal
Rr566950	regulatory region 566950	1433 bp proximal