rs6316631 SNP Detail

Summary

• ID
  rs6316631
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:143927832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAGAGAA AAAGAATTCA
  AAACAAGAAA TGGTACTAAG GGGCTGGAGA GATGGCTCAG TGGTTAAGAG CACTGACTGC
  TCTTCCGAAG GTACTGAGTT CAATTCTCAG CAACCACATG GTGGCTCACA ACCATCTGTA
  ATGAGATCTG ACGCCCTCTT CTGGAGTGTC TGAAGACAGC TACAGTGTAC TTACATATAA
  Y
  AATAAATAAA TCTTAGGGCT GGAGCAAGCA GAAGCCAAGT TTAATTCCCA GCAACCACAT
  GGTGGCTCAC AACCATCTGT ACAGCTACTG TGTACTCATA TACATAAAGT AAATAAATCT
  TAAAAAGAAA GAAAGAAACG ACACTAAGTT GTAGTTATAA ATAGTTAAGT AGTCACGTAT
  GAAAGGCAAC CTTGTGTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss8722608	WI_WGS_5_143071039	WI	MOUSE	f	SNP	T			C
ss45765948	mCV25192121	ABI	CRAMUS_MOUSE	f	SNP		T	C		C
ss144605812	ENSMUSSNP6354617	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
ss321708904	CHEV_5_144751883	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs6316631					SNP	T	T	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143927832 () rs orientation: forward

Symbol	Name	Function Class
Ccz1	CCZ1 vacuolar protein trafficking and biogenesis associated	within coordinates
Rr624320	regulatory region 624320	1637 bp distal
Tssr54387	transcription start site region 54387	1593 bp downstream
Tssr54388	transcription start site region 54388	1617 bp downstream
Tssr54389	transcription start site region 54389	1696 bp downstream