rs6316698 SNP Detail

Summary

• ID
  rs6316698
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:158495260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGACAGGG TTTCGCTGTA
  TAGCCCTGGC TGTCCTGGAA CTCACTGTGT AGACCAGGCT GGCCTCGAAC TCAGAAATCC
  ACCTGCCTCT GCCTCCCAAG TGCTGGGATT AAAGGCGTGC GCTTTTCTTA AGACTTTTGG
  GTCTTCTAAA CTGATTTTGT GCCCTTCTGC TCAGTGGTTA CTCAGTTTGA AAGACACTGC
  Y
  GGGATGGTAT AAGCTATGTT TACTTTAGCT ACAGGCTTGC ACCATCTAAG CCACTTTAAA
  ATTATTTTGC AACAGTATAG CGTGCATATA AAAAACACAC ACGGGCATAT GTCTTGTTGA
  ATTCTCATTC ACCAAGCATG CCTGTGTAGC CAGCAGCACA TCGAAACACA TGCTACTGAT
  TCCAGCTTCT TTGAATCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8722675	WI_WGS_X_136814049	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6316698					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:158495260 () rs orientation: forward

Symbol	Name	Function Class
Rr8414	regulatory region 8414	1659 bp distal
Rr9419	regulatory region 9419	61 bp distal
Rr9420	regulatory region 9420	741 bp proximal
Sh3kbp1	SH3-domain kinase binding protein 1	within coordinates