rs6316703 SNP Detail

Summary

• ID
  rs6316703
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85387114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCAGTGCC TCTTTCCCCT
  TCTCACACCC CTTCTCCAGG CTGCCAGGGT AGATCCCGGC ACAGGAAACC ATGGTATCCA
  AAACACTGGC TGGTCCCCAG TCCAGCTCTG AGTTCTTGGT GTCCTGAAGC CTTCAGCTTC
  CTTTGGTCCT GGTCAGAGGT GTGTTTCTTA GTCTTAAGTC AAATTTCTGA CAGGTGGAAA
  R
  GACAGTCACA CACTCCTGGG TGCTTTGAGA CTCACACAGA AGCCATGTCC CCACTAGATC
  CCAGCCCCTG CTCTCTGCCC TCCTTCTCTC CCTCCCTGCA CCTTCCAGGT GTGGGCTGAT
  TCCTTCCCTG TCCTGGTGCT GTTGGCTCCC AACCTATTCC TGCAGGCAGC CCTCCAGGTT
  GTCTTCTCCT CAGTGATCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8722680	WI_WGS_6_86312033	WI	MOUSE	f	SNP							A		G
ss60906785	NES15956932	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		G		A	A	A	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6316703					SNP	A	A	A	A	A	A	A	G	G	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60906785	NES15956932	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85387114 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17643	CpG island 17643	690 bp distal
Rr633210	regulatory region 633210	424 bp distal
Rr633211	regulatory region 633211	273 bp proximal
Rr633212	regulatory region 633212	735 bp proximal
Rr633213	regulatory region 633213	884 bp proximal
Rr633214	regulatory region 633214	1062 bp proximal