rs6316792 SNP Detail

Summary

• ID
  rs6316792
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85387177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAACCATG GTATCCAAAA
  CACTGGCTGG TCCCCAGTCC AGCTCTGAGT TCTTGGTGTC CTGAAGCCTT CAGCTTCCTT
  TGGTCCTGGT CAGAGGTGTG TTTCTTAGTC TTAAGTCAAA TTTCTGACAG GTGGAAAAGA
  CAGTCACACA CTCCTGGGTG CTTTGAGACT CACACAGAAG CCATGTCCCC ACTAGATCCC
  R
  GCCCCTGCTC TCTGCCCTCC TTCTCTCCCT CCCTGCACCT TCCAGGTGTG GGCTGATTCC
  TTCCCTGTCC TGGTGCTGTT GGCTCCCAAC CTATTCCTGC AGGCAGCCCT CCAGGTTGTC
  TTCTCCTCAG TGATCAAAGG AACAAACAGT GTCTGTCTCC ATCTCAGCTG TCCAGCAACG
  AGGTGTCCTT AGCTTTCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8722769	WI_WGS_6_86312096	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6316792					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85387177 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17643	CpG island 17643	753 bp distal
Rr633210	regulatory region 633210	487 bp distal
Rr633211	regulatory region 633211	210 bp proximal
Rr633212	regulatory region 633212	672 bp proximal
Rr633213	regulatory region 633213	821 bp proximal
Rr633214	regulatory region 633214	999 bp proximal