rs6317028 SNP Detail

Summary

• ID
  rs6317028
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:53747313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGCAGTC GGAGCTGGGC
  GGGTAGCTCG CTCCCAAGTG CCCGGGCTTG TAGTGGTGGC TCTGGGGACA ACCATTCGGG
  GCTCTGACGT GTGGGTGCAA AGTGAACATC GGGGGGTTAG GGGGGACACC TTTGCGCGAG
  GCTGACCTCG GGATGACCCC AGCTCGCATC GGGGAGAAGC GGCGAAAGGC ACAGAGCTTA
  W
  CCCCTAATGC TTTTCCCCTG CAGAGCTCTT GGGAAGGGTC AGCTCACGCG GCGATCACGC
  CTGTCTCGCC GCGTGTGCGG GTCGTGCGGG AGCAAATGAA TGGAGACAGT CGCTGGCAGG
  TCACCGGGGA CCGGGGCTCT GTCCCGATCT CCGCCGCTCC GGCACCTGAT ACTGAGATTA
  GCATAAGGGA GGTGTCCAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8723007	WI_WGS_5_52654421	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6317028					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:53747313 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15869	CpG island 15869	within coordinates
Rbpj	recombination signal binding protein for immunoglobulin kappa J region	within coordinates
Rr367840	regulatory region 367840	885 bp downstream
Rr611644	regulatory region 611644	1248 bp distal
Rr611645	regulatory region 611645	601 bp distal
Rr611646	regulatory region 611646	within coordinates
Rr611647	regulatory region 611647	520 bp proximal
Rr611648	regulatory region 611648	1021 bp proximal
Rr611649	regulatory region 611649	1519 bp proximal
Rr611650	regulatory region 611650	1937 bp proximal
Tssr46224	transcription start site region 46224	1204 bp downstream
Tssr46225	transcription start site region 46225	1006 bp downstream
Tssr46226	transcription start site region 46226	527 bp downstream
Tssr46227	transcription start site region 46227	368 bp upstream
Tssr46228	transcription start site region 46228	382 bp upstream
Tssr46229	transcription start site region 46229	451 bp upstream
Tssr46230	transcription start site region 46230	482 bp upstream
Tssr46231	transcription start site region 46231	685 bp upstream
Tssr46232	transcription start site region 46232	702 bp upstream
Tssr46233	transcription start site region 46233	750 bp upstream
Tssr46234	transcription start site region 46234	1088 bp upstream
Tssr46235	transcription start site region 46235	1262 bp upstream
Tssr46236	transcription start site region 46236	1277 bp upstream
Tssr46237	transcription start site region 46237	1429 bp upstream
Tssr46238	transcription start site region 46238	1495 bp upstream
Tssr46239	transcription start site region 46239	1558 bp upstream
Tssr46240	transcription start site region 46240	1625 bp upstream
Tssr46241	transcription start site region 46241	1946 bp upstream
Tssr51023	transcription start site region 51023	706 bp upstream
Tssr51024	transcription start site region 51024	207 bp downstream
Tssr51025	transcription start site region 51025	601 bp downstream