rs6317165 SNP Detail

Summary

• ID
  rs6317165
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85387201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGGTCCC CAGTCCAGCT
  CTGAGTTCTT GGTGTCCTGA AGCCTTCAGC TTCCTTTGGT CCTGGTCAGA GGTGTGTTTC
  TTAGTCTTAA GTCAAATTTC TGACAGGTGG AAAAGACAGT CACACACTCC TGGGTGCTTT
  GAGACTCACA CAGAAGCCAT GTCCCCACTA GATCCCAGCC CCTGCTCTCT GCCCTCCTTC
  Y
  CTCCCTCCCT GCACCTTCCA GGTGTGGGCT GATTCCTTCC CTGTCCTGGT GCTGTTGGCT
  CCCAACCTAT TCCTGCAGGC AGCCCTCCAG GTTGTCTTCT CCTCAGTGAT CAAAGGAACA
  AACAGTGTCT GTCTCCATCT CAGCTGTCCA GCAACGAGGT GTCCTTAGCT TTCTCCCTTT
  CCCTTCAGGC CATATGTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8723144	WI_WGS_6_86312120	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6317165					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85387201 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17643	CpG island 17643	777 bp distal
Rr633210	regulatory region 633210	511 bp distal
Rr633211	regulatory region 633211	186 bp proximal
Rr633212	regulatory region 633212	648 bp proximal
Rr633213	regulatory region 633213	797 bp proximal
Rr633214	regulatory region 633214	975 bp proximal