rs6317377 SNP Detail

Summary

• ID
  rs6317377
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:136512636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTTGAAT GTGCAAAGTG
  TGAGGATATG ATCTTCCATG AGCAGGAGAC GGGTTGCCCT CCTCAGGCTG CTTGCTCAGA
  ACAGCCATTT GCTCTTCCTT TGGCTGGCTG CCTCTCCTGG TAATTTTCTG CTGCAGCTCT
  CTCTTTACCC CAGCCAGCAA GAGGAAAATG AATTCACCCA GCAGTCCCAG CCATCCCTTC
  K
  GATATTTCAG GAAGAGAACT CGCCAGGCAT TTCGCTGTTA ATTATCAGCA GCCTGGCTGC
  TGTGGCCCCC TGCTGTGCCA GTTTGAGAGA TGAAACTCTT TACACTGCTT ATTGGGCTCA
  GCTAAATAAA TATTACCCAG CATTAGTGTT GTCAAAGATA ACAGTCTGAA TTCCATTCCC
  TGGAGGGGGT GTGGATAACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss8723358	WI_WGS_2_137698317	WI	MOUSE	f	SNP			T		G
ss37449971	NES08968019	PERLEGEN	MM_PANEL2	f	SNP	T	T		G		T	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs6317377					SNP	T	T	T	G	G	T	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37449971	NES08968019	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:136512636 () rs orientation: forward

Symbol	Name	Function Class
Gm32659	predicted gene, 32659	within coordinates
Rr565852	regulatory region 565852	1242 bp distal
Rr565853	regulatory region 565853	708 bp distal
Rr565854	regulatory region 565854	within coordinates