rs6317737 SNP Detail

Summary

• ID
  rs6317737
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85387327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTGGGTG CTTTGAGACT
  CACACAGAAG CCATGTCCCC ACTAGATCCC AGCCCCTGCT CTCTGCCCTC CTTCTCTCCC
  TCCCTGCACC TTCCAGGTGT GGGCTGATTC CTTCCCTGTC CTGGTGCTGT TGGCTCCCAA
  CCTATTCCTG CAGGCAGCCC TCCAGGTTGT CTTCTCCTCA GTGATCAAAG GAACAAACAG
  Y
  GTCTGTCTCC ATCTCAGCTG TCCAGCAACG AGGTGTCCTT AGCTTTCTCC CTTTCCCTTC
  AGGCCATATG TTAGGTTTTC TCAGGAGTCA CACAGGGACT CCACCTTGCC TCACTCTGAC
  CCCCACCTTT GGGAAACACA GATCGTGGCA ATCAGTCCTC TCTCCGTGGA GTTCTAAAGT
  CTTTTTTCTT GCTATTCGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8723718	WI_WGS_6_86312246	WI	MOUSE	f	SNP							T		C
ss60906784	NES15956937	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C		T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6317737					SNP	T	T	T	T	T	T	T	C	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60906784	NES15956937	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85387327 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17643	CpG island 17643	903 bp distal
Rr633210	regulatory region 633210	637 bp distal
Rr633211	regulatory region 633211	60 bp proximal
Rr633212	regulatory region 633212	522 bp proximal
Rr633213	regulatory region 633213	671 bp proximal
Rr633214	regulatory region 633214	849 bp proximal