rs6317839 SNP Detail

Summary

• ID
  rs6317839
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102903852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTCTTACA CAAGTGCCTG
  AACAGTTCAC AAGCGTGCAC ATCGCATACA TATATTTAGA TCAGTGCTTC AAGGGTCAAC
  TGGTAACAGT AAAATCTGTT AGATTGCTCT TTTAAAAGTC TTCCTGGTTG ATGACCTTGA
  AAGATGTATT CAGTAGTTTA GCAGAGTTGA ATTGTTAGAT GGCTGGGGAG TGACCACATA
  Y
  CAAATGGAGG CTTCTATAAC TAAAGTTCAT AGTCTCCAAA TGTAACATTT CGATATTAGA
  GTGAACACTA AAGTTAAGAT CGACGTTTCT TTAATGTTCC TGTGCAAGAT GGAAGGCTAG
  AACTTCGTCC CCCAAATACA TAGTCTTAGG GTTGTTGATG ACAGCAGGAT GGTAGTTGTC
  TGATGGAGCC CTTTTACATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8723821	WI_WGS_3_103105632	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6317839					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102903852 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13629	CpG island 13629	196 bp distal
Rr397897	regulatory region 397897	719 bp downstream
Rr582293	regulatory region 582293	731 bp distal
Sike1	suppressor of IKBKE 1	within coordinates
Tssr30945	transcription start site region 30945	748 bp downstream
Tssr30946	transcription start site region 30946	726 bp downstream
Tssr30947	transcription start site region 30947	376 bp downstream