rs6317873 SNP Detail

Summary

• ID
  rs6317873
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:34841791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AGGCCTGAGC
  CACCACCGTC CAGCTCAAAC TTACTTCTTT TTACAGCTTG TTCTCCCAAG CAATCTGAAT
  GCTCCTTTTA CCTTCCTTTA AAACCAAATG TTCTACCCAA CACATTTCAC TAACTCTAAA
  ATATTCTGAG AATTCAATGT TCCTCACTTC AACTATTATC ACACTGGCTT AAATCACTAT
  CATTGTGACC TGGATCATTG TAATAATTTT CTGATACCAC TTTTCACCAG CTAATTCATA
  K
  CGATTCATTC CTGGATCCTT CTGTGTAATC TCTTGAAGAC TGACGACGTT TGTTTCTTTC
  ATTTATTTTG AAATATGTAT ATTTTCCAAT ACAACCTTGT ATATGCTCCA CAAGTACTTC
  TTGGAATCAA TACATATTTT ATTACATTAC ATAAATGCCA GTATATTTAT GAACACTGAT
  AGTAAGGTAC TTTTTATGAA GAAAGTACTA AAAAAAGAAA TGAGTGGGGT CAGCAGATTA
  AAGGAGCTTT                                                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8723855	WI_WGS_16_34822417	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6317873					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:34841791 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8220	CpG island 8220	664 bp proximal
Gm21691	predicted gene, 21691	within coordinates
Hacd2	3-hydroxyacyl-CoA dehydratase 2	1007 bp upstream
Rr404796	regulatory region 404796	715 bp upstream
Rr515294	regulatory region 515294	299 bp proximal
Rr515295	regulatory region 515295	825 bp proximal
Rr515296	regulatory region 515296	1774 bp proximal
Tssr138201	transcription start site region 138201	973 bp upstream
Tssr138202	transcription start site region 138202	1029 bp upstream