rs6317971 SNP Detail

Summary

• ID
  rs6317971
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:93437693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AGTGACTCAA
  CTTCCTCTTC TATAAATCAA GGATGATGCT CGATTGCTTG TCGTCACTGA AGAGATTACA
  TGGTATATTT ATTTAAATGC TTTAAAATTG NTCCTGACCA ACACATTGTT AAATGATCCT
  CTTCCATTTG TGGGAACACT CAAATAGCAA TTTGAAGTAC TGTAATGTTT TCATTTATTC
  CTCCAACTAA GTTTGCTGTT GAATTAGTTA CTTAAGCTGA ACATATAACC AAAACATTAG
  K
  CTTCATTTGC CACTCAAATG AAATCATGTT TGAACTTGTT ACATCAACTA AAACTAAGAA
  TATTTCGTTT TATTCAAGCT AATTTAGTCT ATGTCTACTA TCTCTATAAA GAATACACTA
  TATTTCTGAT CTCATTTCCT CTGTTTCATT TCTAACACAT CAGAGACTCT GGAATATTTT
  TTAGCTAATT ATTTTGTGAA ATGATTTTTT TACGTATACT ACTGTATTTA TTTTCACTTC
  CTGTTTCATG                                                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8723953	WI_WGS_14_84345062	WI	MOUSE	f	SNP			T	G
ss49340292	NES12579458	PERLEGEN	MM_PANEL2	f	SNP	T	T			T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6317971					SNP	T	T	T	G	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49340292	NES12579458	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:93437693 () rs orientation: forward

Symbol	Name	Function Class
Gm17922	predicted gene, 17922	1843 bp downstream
Pcdh9	protocadherin 9	within coordinates
Tssr129946	transcription start site region 129946	1849 bp downstream
Tssr129947	transcription start site region 129947	1876 bp downstream
Tssr129948	transcription start site region 129948	1968 bp downstream