rs6318035 SNP Detail

Summary

• ID
  rs6318035
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19915211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTTTCTG CTGAAACCTG
  GATCCTTTCC CACACTGGCG TGGTCAGTTT TGGTAAAATG GTCTTGGAGA ATGGTTTGCT
  TGGTTGTTAT TTCAGTTTTC CAAGTGTGAG TTTGAGGGGC AGATTGTCCC CTGAGCAGGA
  AGACTGAGGT GGCTGGCGGC TGTCCAGCAA ATACAGGCAG TGCAGTTCTG TATTTAGAGG
  Y
  TGAGTAGAGA CATGGGCCAC TGCAGTTTCA AGAACTTCCT CTGGAAAGGA GGAAAGCTGT
  GCTGGCAGCA GTGAATGCTT ATGTAAACAT TCAGTGAACT AGTTTGCTTC AGATGATATT
  AAAAATATCA TGATTTTAAA ATATTAAACC ATAAGAGGCA GCTTTAGCTC TTGACCTTTA
  AGTGTCATGA TAATTAGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8724017	WI_WGS_13_19136492	WI	MOUSE	f	SNP					C		T
ss51072359	NES14365027	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C		C		C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6318035					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51072359	NES14365027	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19915211 () rs orientation: forward

Symbol	Name	Function Class
Gpr141b	G protein-coupled receptor 141B	within coordinates
Tssr121608	transcription start site region 121608	1689 bp downstream
Tssr121609	transcription start site region 121609	1759 bp downstream
Tssr121610	transcription start site region 121610	1888 bp downstream