rs6320010 SNP Detail

Summary

• ID
  rs6320010
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:125871014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AGTTCTACCA
  GCAGCTGGAG TGGTTGGAAG AGGATGCTAA TTTGAGAAAA CAATCTGATC AGAGATTAAA
  AGGAGGAGAG ATTTTGGGTG CGTCGGGGGC TTTTTCTATG AATAAAATAG TATGCTGCAT
  GGGAGACTGG GCCTCTGGAA GGATGCGTTC GTTGTTCCCA CTCTGTCGCC ATCTCTGCTC
  GATCGCCCCA CCTGCATCCA GGCTACAATT TCCGGTTAAT GAACAAAGCT CTTCACACCC
  R
  GGTGGCTTTG CACAGCTGCT GCTTCAGCCA GGAACCCCCC ACCCCCTTCT TCCGTTCTGC
  TATACACCTT TAATCCCAGC TTTTCCTTAA ACTTACTTCG CGGTCTCNCT ACAGCAGAGC
  TCGAAAGTTC TGCCTGAACC CTGCACGGCC CCACAGACCC CAGGTCTCTG AGTAGCCTAG
  TAGTCTTATG AGGTCCCCTG GAAATCGAAT GGATAGGTGG AAGGATGAAT GGGCAGACAG
  GCGGGTGAAC                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8725992	WI_WGS_7_116126366	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6320010					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:125871014 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19689	CpG island 19689	within coordinates
Rr368426	regulatory region 368426	within coordinates
Rr381444	regulatory region 381444	792 bp downstream
Rr655453	regulatory region 655453	287 bp proximal
Sbk1	SH3-binding kinase 1	within coordinates
Tssr69002	transcription start site region 69002	571 bp upstream
Tssr69003	transcription start site region 69003	586 bp upstream
Tssr69004	transcription start site region 69004	602 bp upstream
Tssr69005	transcription start site region 69005	621 bp upstream
Tssr69006	transcription start site region 69006	633 bp upstream
Tssr69007	transcription start site region 69007	664 bp upstream
Tssr69008	transcription start site region 69008	684 bp upstream
Tssr69009	transcription start site region 69009	747 bp upstream
Tssr69010	transcription start site region 69010	942 bp upstream
Tssr69011	transcription start site region 69011	1005 bp upstream