rs6320565 SNP Detail

Summary

• ID
  rs6320565
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74534308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCAGATTT GCACAGGTGC
  CACGGTAAGG GCACTGCCTA GTCCAGAAGA TGCTAATCCT GGACTTCTGC AGATGACACT
  GCGTCTCTTC CTTAACGCCC ACAAACCAGG CTTCTCTTGA CTTCCGAGCC TTCTCTTTAT
  TTCTCTCGGG AAAATCAAGT TTATGCTAAG GCCTGCATCC AGTCTCTGGC AGTTCTTTCC
  S
  AGTGGTGTGT GAGCTAAGGT CGTTAAGCAC AGGACAGGGA AGGTCTGCCT GCAGCTGCCT
  GGAACCAGCA CGGTCCGAAA GCGGACTGAG GAATTCAATT TCTCCTGCCC CATCCCCCGG
  CCCCCGCCGC GCTCCACCCG GGACCACAGC CCGCCCGAGT CTGGGCGCCT GGGTTGGGAC
  CCGGGAGCCC TGCGCCCTGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8726547	WI_WGS_2_75565119	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6320565					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74534308 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11800	CpG island 11800	42 bp proximal
Gm38462	predicted gene, 38462	within coordinates
Gm75671	predicted gene, 75671	526 bp downstream
Hoxd8	homeobox D8	665 bp upstream
Igs15	intergenic site 15	within coordinates
Rr44607	regulatory region 44607	1308 bp distal
Rr559361	regulatory region 559361	917 bp distal
Rr559362	regulatory region 559362	1552 bp distal
Rr559363	regulatory region 559363	within coordinates
Rr559364	regulatory region 559364	286 bp proximal
Rr559365	regulatory region 559365	662 bp proximal
Rr559366	regulatory region 559366	766 bp proximal
Rr559367	regulatory region 559367	783 bp proximal
Tssr18420	transcription start site region 18420	568 bp upstream
Tssr18421	transcription start site region 18421	659 bp upstream
Tssr18422	transcription start site region 18422	861 bp upstream
Tssr18423	transcription start site region 18423	897 bp upstream
Tssr18424	transcription start site region 18424	953 bp upstream
Tssr18425	transcription start site region 18425	1082 bp upstream
Tssr18426	transcription start site region 18426	1122 bp upstream
Tssr18427	transcription start site region 18427	1181 bp upstream
Tssr18428	transcription start site region 18428	1214 bp upstream
Tssr18429	transcription start site region 18429	1376 bp upstream
Tssr18430	transcription start site region 18430	1774 bp upstream
Tssr24623	transcription start site region 24623	1851 bp downstream