rs6320600 SNP Detail

Summary

• ID
  rs6320600
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:125871122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TGAATAAAAT
  AGTATGCTGC ATGGGAGACT GGGCCTCTGG AAGGATGCGT TCGTTGTTCC CACTCTGTCG
  CCATCTCTGC TCGATCGCCC CACCTGCATC CAGGCTACAA TTTCCGGTTA ATGAACAAAG
  CTCTTCACAC CCNGGTGGCT TTGCACAGCT GCTGCTTCAG CCAGGAACCC CCCACCCCCT
  TCTTCCGTTC TGCTATACAC CTTTAATCCC AGCTTTTCCT TAAACTTACT TCGCGGTCTC
  Y
  CTACAGCAGA GCTCGAAAGT TCTGCCTGAA CCCTGCACGG CCCCACAGAC CCCAGGTCTC
  TGAGTAGCCT AGTAGTCTTA TGAGGTCCCC TGGAAATCGA ATGGATAGGT GGAAGGATGA
  ATGGGCAGAC AGGCGGGTGA ACAGATGGAC CGGTAGTTGA ATGAGCNAGT GCATTCTGAA
  TAGGAGAGCT CGGATTTATT TTTCTTCTTT GAAACAGATC CAGGCTCCGC CCCACAAGCA
  CAGGCTGGAA                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8726582	WI_WGS_7_116126474	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6320600					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:125871122 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19689	CpG island 19689	within coordinates
Rr368426	regulatory region 368426	49 bp downstream
Rr381444	regulatory region 381444	900 bp downstream
Rr655453	regulatory region 655453	179 bp proximal
Sbk1	SH3-binding kinase 1	within coordinates
Tssr69002	transcription start site region 69002	463 bp upstream
Tssr69003	transcription start site region 69003	478 bp upstream
Tssr69004	transcription start site region 69004	494 bp upstream
Tssr69005	transcription start site region 69005	513 bp upstream
Tssr69006	transcription start site region 69006	525 bp upstream
Tssr69007	transcription start site region 69007	556 bp upstream
Tssr69008	transcription start site region 69008	576 bp upstream
Tssr69009	transcription start site region 69009	639 bp upstream
Tssr69010	transcription start site region 69010	834 bp upstream
Tssr69011	transcription start site region 69011	897 bp upstream