rs6321468 SNP Detail

Summary

• ID
  rs6321468
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:78006389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAAT GCTACCTATG TTAATGGCTC
  Y
  AAGCAGGTAA GCCACATCAG GGCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8727451	WI_WGS_1_78879801	WI	MOUSE	f	SNP								C		T
ss45136286	mCV25069673	ABI	CRAMUS_MOUSE	f	SNP		T	T					C			C
ss51286096	NES14517054	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T		C	T	T		T	C	T	T		C
ss144739144	ENSMUSSNP6380502	ENSEMBL	ENSEMBL_Sanger	f	SNP			T								C
ss319801910	CHEV_1_78026327	CHEVERUD	SCREENING_POP	f	SNP														C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6321468					SNP	T	T	T	T	T	T	T	C	T	T	C	T	T	C	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51286096	NES14517054	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:78006389 () rs orientation: forward

Symbol	Name	Function Class
Gm70314	predicted gene, 70314	within coordinates